Briefings in Bioinformatics (Volume 14 Issue 2 March 2013), Special Issue: Next Generation Sequencing Visualization:

• Editorial
• A brief introduction to web-based genome browsers
• The UCSC genome browser and associated tools
• Using GBrowse 2.0 to visualize and share next-generation sequence data
• Visualizing next-generation sequencing data with JBrowse
• Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
• Using Tablet for visual exploration of second-generation sequencing data
• BamView: visualizing and interpretation of next-generation sequencing read alignments
• Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies
• Motif discovery and transcription factor binding sites before and after the next-generation sequencing era
• Bioinformatics opportunities for identification and study of medicinal plants
• Machine learning approaches for the discovery of gene–gene interactions in disease data